Yes wheel is under tension as it was when I purchased it used. I used for a few weeks, I dont think sopke threads are all the way through the rin and into the nipple. I can put a wire down the nip side about 1/8" to 1/16".Is the wheel still together and under tension? What does it look like on the tire side of the rim? Stick something down the hole of a few of them and see how far it goes if you cant just see the end. I think you should be able to see the end.
I don't know whether it is splitting hairs or not. I do know that brass work hardens when subjected to stress. if the nipple were to crack, and the spoke were not through the head of the nipple, the tension would release. If it were through the head, it probably wouldn't crack in the first place, and if it did, it would have to strip the threads or pull the head through the hole in the rim before the tension could release. That said, I have ever seen a nipple break that way but I have seen a lot of broken spokes.
Your LBS or whoever you are buying spokes from can make them whatever length you want. I suggest getting some that fit, never mind whether the old ones were the ideal size.
I'm new at wheel building, but this doesnt seem optimal, I like the idea of using slightly longer spokes.